Re-run this search with the SEG filter switched off
Re-run this search as BLASTX i.e. nucleotide query
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= NCAS0B09150
(150 letters)
Database: Seq/AA.fsa
114,666 sequences; 53,481,399 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
NCAS0B09150 Chr2 (1755595..1756047) [453 bp, 150 aa] {ON} Anc_1.1 308 e-109
Smik_92.1 Chr92 complement(3..470) [468 bp, 156 aa] {ON} YCR040W... 82 1e-19
YCR040W Chr3 (200442..200969) [528 bp, 175 aa] {ON} MATALPHA1Tr... 81 2e-19
YCL066W Chr3 (13282..13809) [528 bp, 175 aa] {ON} HMLALPHA1Sile... 81 2e-19
Suva_3.148 Chr3 (222811..223338) [528 bp, 175 aa] {ON} YCL066W (... 81 3e-19
Suva_69.2 Chr69 (369..803) [435 bp, 145 aa] {ON} YCL066W (REAL) 80 4e-19
Skud_71.1 Chr71 complement(3..467) [465 bp, 155 aa] {ON} YCR040W... 72 4e-16
Skud_3.119 Chr3 (184941..185465) [525 bp, 174 aa] {ON} YCR040W (... 72 7e-16
TDEL0C07010 Chr3 (1274648..1275265) [618 bp, 205 aa] {ON} Anc_1.... 72 8e-16
ZYRO0F18590g Chr6 (1533781..1534383) [603 bp, 200 aa] {ON} simil... 67 6e-14
ZYRO0F15840g Chr6 (1303842..1304444) [603 bp, 200 aa] {ON} simil... 67 6e-14
NDAI0A00100 Chr1 complement(783..1190) [408 bp, 135 aa] {ON} Anc... 65 1e-13
CAGL0B01243g Chr2 complement(112831..113262) [432 bp, 143 aa] {O... 60 1e-11
CAGL0B00242g Chr2 complement(10582..11136) [555 bp, 184 aa] {ON}... 60 3e-11
KNAG0C00150 Chr3 complement(24902..25339) [438 bp, 145 aa] {ON} ... 59 3e-11
TBLA0A07040 Chr1 complement(1727988..1728593) [606 bp, 201 aa] {... 59 1e-10
TBLA0A07590 Chr1 complement(1881757..1882362) [606 bp, 201 aa] {... 59 1e-10
Kpol_2002.2 s2002 complement(3611..4240) [630 bp, 209 aa] {ON} c... 56 1e-09
KLTH0F00374g Chr6 complement(30927..31676) [750 bp, 249 aa] {ON}... 56 2e-09
Kwal_33.matalpha1 s33 complement(283160..283894) [735 bp, 244 aa... 53 2e-08
Kwal_33.12992 s33 complement(31018..31752) [735 bp, 244 aa] {OFF... 53 2e-08
Kwal_YGOB_matalpha1 s33 complement(283160..283894) [735 bp, 244 ... 53 2e-08
Kwal_YGOB_HMalpha1 s33 complement(31018..31752) [735 bp, 244 aa]... 53 2e-08
KLLA0C00352g Chr3 complement(24124..24909) [786 bp, 261 aa] {ON}... 48 2e-06
KAFR0D00710 Chr4 complement(127819..128337) [519 bp, 172 aa] {ON... 47 2e-06
Ecym_1003 Chr1 (6314..7105) [792 bp, 263 aa] {ON} similar to Sac... 44 4e-05
Ecym_1114 Chr1 complement(236238..237029) [792 bp, 263 aa] {ON} ... 44 4e-05
TPHA0E03620 Chr5 (766068..766655) [588 bp, 195 aa] {ON} Anc_1.12... 43 5e-05
TPHA0E04080 Chr5 (850045..850632) [588 bp, 195 aa] {ON} silenc... 43 5e-05
KNAG0H00720 Chr8 (114623..116173) [1551 bp, 516 aa] {ON} Anc_3.3... 31 0.92
SAKL0D10450g Chr4 (875475..877151) [1677 bp, 558 aa] {ON} highly... 30 1.7
Skud_16.350 Chr16 (644526..645644) [1119 bp, 372 aa] {ON} YPR065... 30 1.8
YPR065W Chr16 (679693..680799) [1107 bp, 368 aa] {ON} ROX1Heme-... 30 2.1
TPHA0E03640 Chr5 complement(769962..773375) [3414 bp, 1137 aa] {... 30 2.4
Skud_6.105 Chr6 (190549..192051) [1503 bp, 500 aa] {ON} YFR021W ... 29 5.4
NCAS0A01050 Chr1 complement(207858..209774) [1917 bp, 638 aa] {O... 29 6.3
>NCAS0B09150 Chr2 (1755595..1756047) [453 bp, 150 aa] {ON} Anc_1.1
Length = 150
Score = 308 bits (788), Expect = e-109, Method: Compositional matrix adjust. Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MSSTIYCNQNKPLFKVNIPRRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNW 60
MSSTIYCNQNKPLFKVNIPRRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNW
Sbjct: 1 MSSTIYCNQNKPLFKVNIPRRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNW 60
Query: 61 VLQELETIRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAK 120
VLQELETIRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAK
Sbjct: 61 VLQELETIRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAK 120
Query: 121 FWKSSDTDQALWDYFALQYSTVGCEMGVWV 150
FWKSSDTDQALWDYFALQYSTVGCEMGVWV
Sbjct: 121 FWKSSDTDQALWDYFALQYSTVGCEMGVWV 150
>Smik_92.1 Chr92 complement(3..470) [468 bp, 156 aa] {ON} YCR040W
(REAL)
Length = 156
Score = 81.6 bits (200), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 11 KPLFKVN--IPRRVRNRNSKQPLKPKPVTYDT---CFNIFLKDPKNITIPQPPNWVLQEL 65
KP F++N I + RN + +K + +T CFN+ K+I IP P + L+++
Sbjct: 5 KPAFRINNKISKSHRNPVVSKKIKERRITKHVKPNCFNVIRPLKKDIQIPIPSSRFLKKI 64
Query: 66 ETIRIIYPSK--QKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWK 123
+ RI ++ Q + K + K +N F+ FR+YYS++G G+KQ +LS LL++ W
Sbjct: 65 QIHRIASGNQHIQCRQLNKTSIKSTKKYLNSFMAFRAYYSQFGSGVKQNILSSLLSEEWH 124
Query: 124 SSDTDQALWDYFALQYSTVGCEMG 147
+ T +WDYFA QY+ + G
Sbjct: 125 ADKTQHGIWDYFAQQYNFINPGFG 148
>YCR040W Chr3 (200442..200969) [528 bp, 175 aa] {ON}
MATALPHA1Transcriptional co-activator involved in
regulation of mating-type-specific gene expression;
targets the transcription factor Mcm1p to the promoters
of alpha-specific genes; one of two genes encoded by the
MATalpha mating type cassette
Length = 175
Score = 81.3 bits (199), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 10 NKPLFKVN--IPRRVRNRNSKQPLKPKPVTYD---TCFNIFLKDPKNITIPQPPNWVLQE 64
+KP FK+ + RN + LK K + +CFNI K+I IP P + L +
Sbjct: 4 SKPAFKIKNKASKSYRNTAVSKKLKEKRLAEHVRPSCFNIIRPLKKDIQIPVPSSRFLNK 63
Query: 65 LETIRIIYPSK--QKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFW 122
++ RI S+ Q + K + K +N F+ FR+YYS++G G+KQ +LS LLA+ W
Sbjct: 64 IQIHRIASGSQNTQFRQFNKTSIKSSKKYLNSFMAFRAYYSQFGSGVKQNVLSSLLAEEW 123
Query: 123 KSSDTDQALWDYFALQYSTVGCEMG 147
+ +WDYFA QY+ + G
Sbjct: 124 HADKMQHGIWDYFAQQYNFINPGFG 148
>YCL066W Chr3 (13282..13809) [528 bp, 175 aa] {ON}
HMLALPHA1Silenced copy of ALPHA1 at HML, encoding a
transcriptional coactivator involved in the regulation
of mating-type alpha-specific gene expression
Length = 175
Score = 81.3 bits (199), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 10 NKPLFKVN--IPRRVRNRNSKQPLKPKPVTYD---TCFNIFLKDPKNITIPQPPNWVLQE 64
+KP FK+ + RN + LK K + +CFNI K+I IP P + L +
Sbjct: 4 SKPAFKIKNKASKSYRNTAVSKKLKEKRLAEHVRPSCFNIIRPLKKDIQIPVPSSRFLNK 63
Query: 65 LETIRIIYPSK--QKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFW 122
++ RI S+ Q + K + K +N F+ FR+YYS++G G+KQ +LS LLA+ W
Sbjct: 64 IQIHRIASGSQNTQFRQFNKTSIKSSKKYLNSFMAFRAYYSQFGSGVKQNVLSSLLAEEW 123
Query: 123 KSSDTDQALWDYFALQYSTVGCEMG 147
+ +WDYFA QY+ + G
Sbjct: 124 HADKMQHGIWDYFAQQYNFINPGFG 148
>Suva_3.148 Chr3 (222811..223338) [528 bp, 175 aa] {ON} YCL066W
(REAL)
Length = 175
Score = 80.9 bits (198), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 8/135 (5%)
Query: 15 KVNIPRRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELETIRIIYPS 74
K +I ++V + + + P +CFNI KNI IP P L++++ RI +
Sbjct: 20 KTDIAKKVEGKRIAKLINP------SCFNIIRPLKKNIQIPAPSPLFLKKIQLYRIASGN 73
Query: 75 K--QKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALW 132
+ Q + RK + K +N F+ FR+YYS++G G+KQ +LS LL++ W + +W
Sbjct: 74 QNIQCRQSRKASITPSKKYLNSFMAFRAYYSQFGAGVKQNILSSLLSEEWHADKMQHGIW 133
Query: 133 DYFALQYSTVGCEMG 147
DYFA QY+ + G
Sbjct: 134 DYFAQQYNFINPGFG 148
>Suva_69.2 Chr69 (369..803) [435 bp, 145 aa] {ON} YCL066W (REAL)
Length = 145
Score = 79.7 bits (195), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 8/130 (6%)
Query: 15 KVNIPRRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELETIRIIYPS 74
K +I ++V + + + P +CFNI KNI IP P L++++ RI +
Sbjct: 20 KTDIAKKVEGKRIAKLINP------SCFNIIRPLKKNIQIPAPSPLFLKKIQLYRIASGN 73
Query: 75 K--QKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALW 132
+ Q + RK + K +N F+ FR+YYS++G G+KQ +LS LL++ W + +W
Sbjct: 74 QNIQCRQSRKASITPSKKYLNSFMAFRAYYSQFGAGVKQNILSSLLSEEWHADKMQHGIW 133
Query: 133 DYFALQYSTV 142
DYFA QY+ +
Sbjct: 134 DYFAQQYNFI 143
>Skud_71.1 Chr71 complement(3..467) [465 bp, 155 aa] {ON} YCR040W
(REAL)
Length = 155
Score = 72.4 bits (176), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 40 TCFNIFLKDPKNITIPQPPNWVLQELETIRIIYPSKQKPKPRK---QVTSNPSKPINGFI 96
+CFN+ K+I IP P + L++++ RI Q + R+ + K IN F+
Sbjct: 38 SCFNVIRPLKKDIQIPAPASRFLKKIQIHRI-SSGNQTTQCRQLSKASIKSSKKHINSFM 96
Query: 97 LFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTVGCEMG 147
FR+YYS++G G+KQ +LS LL++ W + +WDYFA QY+ + G
Sbjct: 97 AFRAYYSQFGSGVKQNILSSLLSEEWHADKMQHGIWDYFAQQYNFINPGFG 147
>Skud_3.119 Chr3 (184941..185465) [525 bp, 174 aa] {ON} YCR040W
(REAL)
Length = 174
Score = 72.0 bits (175), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 40 TCFNIFLKDPKNITIPQPPNWVLQELETIRIIYPSKQKPKPRK---QVTSNPSKPINGFI 96
+CFN+ K+I IP P + L++++ RI Q + R+ + K IN F+
Sbjct: 38 SCFNVIRPLKKDIQIPAPASRFLKKIQIHRI-SSGNQTTQCRQLSKASIKSSKKHINSFM 96
Query: 97 LFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTVGCEMG 147
FR+YYS++G G+KQ +LS LL++ W + +WDYFA QY+ + G
Sbjct: 97 AFRAYYSQFGSGVKQNILSSLLSEEWHADKMQHGIWDYFAQQYNFINPGFG 147
>TDEL0C07010 Chr3 (1274648..1275265) [618 bp, 205 aa] {ON} Anc_1.121
YCR040W silenced copy of alpha1 gene at T. delbrueckii
HML locus
Length = 205
Score = 72.4 bits (176), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 80/186 (43%), Gaps = 47/186 (25%)
Query: 10 NKPLFKVNIPRRVRNRNSKQPLKPKPVTYDTC------------FNIFLKDPKNITIPQP 57
N+PLFKV I + R K K K D C F+ + I IP P
Sbjct: 14 NRPLFKVQINKDSRTSQCKAKTKFKKAKLDKCQPENSGRLEERHVKTFVVILRPIKIPLP 73
Query: 58 PNWVLQELETIRIIYPSKQKP-------------------------------KPRKQVTS 86
PN +L+++E + S+ P KP ++ S
Sbjct: 74 PNILLEKIEQEKRKVYSETSPEIGSLWDSPIAWDNEDLLFSIASDVLGNIYKKPARETAS 133
Query: 87 NPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTV--GC 144
N KP+N F+ FR+Y S++GYG+KQ +LS LLA W S Q +WD FA Q++ V C
Sbjct: 134 N--KPLNSFMAFRAYNSQFGYGLKQNILSSLLASAWHSHPEQQGIWDTFAQQFNFVKPKC 191
Query: 145 EMGVWV 150
WV
Sbjct: 192 GFVEWV 197
>ZYRO0F18590g Chr6 (1533781..1534383) [603 bp, 200 aa] {ON} similar
to uniprot|P01365 Saccharomyces cerevisiae YCR040W
MATALPHA1 Transcriptional co-activator involved in
regulation of mating-type-specific gene expression
targets the transcription factor Mcm1p to the promoters
of alpha- specific genes one of two genes encoded by the
alpha mating type cassette
Length = 200
Score = 67.4 bits (163), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 44/182 (24%)
Query: 10 NKPLFKVNIPRRVRNRNSKQPLKPKPVTYDTCF----------NIFLKDPKNITIPQPPN 59
N+PLFKV + ++ R SK+P C N+F+ K I IP PP
Sbjct: 12 NQPLFKVKVEKKGR---SKRPTLQDTTQTSKCIAGKCIEDQQVNVFMTVSKLIKIPSPPE 68
Query: 60 WVLQELETIR-----------------------------IIYPSKQKPKPRKQVTSNPSK 90
+L+++E + I S + K
Sbjct: 69 VLLRKIEEEKHKLKKDDFNMDNILLWDPYVYWGEGYFFSIADSSLNNLSTKGSRKGCSEK 128
Query: 91 PINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTV--GCEMGV 148
P+N F+ FR+Y S++G G+KQ +LS LLA W S Q +WD FA Q++ V C
Sbjct: 129 PLNSFMAFRAYNSQFGNGLKQNILSSLLAAAWHSHPEQQKIWDTFAQQFNFVKPKCGFVE 188
Query: 149 WV 150
WV
Sbjct: 189 WV 190
>ZYRO0F15840g Chr6 (1303842..1304444) [603 bp, 200 aa] {ON} similar
to uniprot|P01365 Saccharomyces cerevisiae YCR040W
MATALPHA1 Transcriptional co-activator involved in
regulation of mating-type-specific gene expression
targets the transcription factor Mcm1p to the promoters
of alpha- specific genes one of two genes encoded by the
alpha mating type cassette
Length = 200
Score = 67.4 bits (163), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 44/182 (24%)
Query: 10 NKPLFKVNIPRRVRNRNSKQPLKPKPVTYDTCF----------NIFLKDPKNITIPQPPN 59
N+PLFKV + ++ R SK+P C N+F+ K I IP PP
Sbjct: 12 NQPLFKVKVEKKGR---SKRPTLQDTTQTSKCIAGKCIEDQQVNVFMTVSKLIKIPSPPE 68
Query: 60 WVLQELETIR-----------------------------IIYPSKQKPKPRKQVTSNPSK 90
+L+++E + I S + K
Sbjct: 69 VLLRKIEEEKHKLKKDDFNMDNILLWDPYVYWGEGYFFSIADSSLNNLSTKGSRKGCSEK 128
Query: 91 PINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTV--GCEMGV 148
P+N F+ FR+Y S++G G+KQ +LS LLA W S Q +WD FA Q++ V C
Sbjct: 129 PLNSFMAFRAYNSQFGNGLKQNILSSLLAAAWHSHPEQQKIWDTFAQQFNFVKPKCGFVE 188
Query: 149 WV 150
WV
Sbjct: 189 WV 190
>NDAI0A00100 Chr1 complement(783..1190) [408 bp, 135 aa] {ON}
Anc_1.1 silent copy of MATalpha1 gene at HMLalpha
possible pseudogene; contains 2 copies of a 20 bp direct
repeat, causing a frameshft; synthetic translation made
by ignoring one copy.
Length = 135
Score = 65.5 bits (158), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 54 IPQPPNWVLQELE-----TIRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYG 108
+P PP W L + T R+ Y K+ R + +K INGF+LFRSYYS++G G
Sbjct: 21 VPPPPKWFLDSINFEHNPTTRLTYFQKESIL-RPYQSRCYAKSINGFMLFRSYYSQYGKG 79
Query: 109 IKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTVGCEMGV 148
+KQ++LS LL+K W + +TDQ LWD FA Q + +G E G+
Sbjct: 80 LKQSLLSPLLSKLWNAHETDQLLWDQFAQQCNAIGHEGGI 119
>CAGL0B01243g Chr2 complement(112831..113262) [432 bp, 143 aa] {ON}
some similarities with uniprot|P01365 Saccharomyces
cerevisiae YCR040w MATALPHA1 expressed copy at MAT locus
or uniprot|P01365 Saccharomyces cerevisiae YCL066w
HMLALPHA1 silenced copy at HML
Length = 143
Score = 60.1 bits (144), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 90 KPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYS 140
+P+N F+ FR+YY++ G G+KQ LS +L++ W + +TDQ +WD FA Q++
Sbjct: 73 RPMNAFMAFRTYYAQLGTGLKQNTLSVILSEAWNAPETDQNIWDIFAQQFN 123
>CAGL0B00242g Chr2 complement(10582..11136) [555 bp, 184 aa] {ON}
some similarities with uniprot|P01365 Saccharomyces
cerevisiae YCR040w MATALPHA1 mating type regulatory
protein or uniprot|P01365 Saccharomyces cerevisiae
YCL066w HMLALPHA1
Length = 184
Score = 60.1 bits (144), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 90 KPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYS 140
+P+N F+ FR+YY++ G G+KQ LS +L++ W + +TDQ +WD FA Q++
Sbjct: 114 RPMNAFMAFRTYYAQLGTGLKQNTLSVILSEAWNAPETDQNIWDIFAQQFN 164
>KNAG0C00150 Chr3 complement(24902..25339) [438 bp, 145 aa] {ON}
Anc_1.1 YCL066W silent copy of mating type alpha1 gene
at HML locus
Length = 145
Score = 59.3 bits (142), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 11 KPLFKVNIPRRVRNRNS--KQPLKPKPVTYDTCFNIFLKDPKNITIPQPP---NWVLQEL 65
KPLFK+NI + + S K+ +P ++ + N PK IP P + + L
Sbjct: 5 KPLFKMNITQSHSSNKSIRKRTRRPNLNSFAST-NAAKNTPK---IPDPNIIRAVLFRNL 60
Query: 66 ETIRIIYPSKQKPKPRKQVTSNPSK-----PINGFILFRSYYSRWGYGIKQTMLSQLLAK 120
R I + +P + +N FI FR+YYS++ GI Q LS +L+K
Sbjct: 61 NDDRNIISHDDSSSLSAKTIRSPREICKHGSLNSFIAFRAYYSQFANGINQNKLSSILSK 120
Query: 121 FWKSSDTDQALWDYFALQYSTVG 143
FWKS+ + Q WD QY +
Sbjct: 121 FWKSNQSQQTFWDRLTEQYKQID 143
>TBLA0A07040 Chr1 complement(1727988..1728593) [606 bp, 201 aa] {ON}
MATalpha1 gene at MAT locus
Length = 201
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 1 MSSTIYCNQNKPLFKVNIP--RRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPP 58
MS+ + K LFKVN+ + +R + + + ++ K +I L NI IP PP
Sbjct: 1 MSNKTMNHTKKALFKVNLKLNKNIRMKTNSKSMRNK-FNETRGISILLYKNHNIKIPFPP 59
Query: 59 NWVLQELETIRIIYPSKQKPKPRKQVTSNPS----------------------------- 89
+L +E + S Q + ++ +
Sbjct: 60 TTLLYNIEVEKQKIISTQHMLNEYTMDNDDNYLSDLFYEDEYNDNNSLFDNGFPNNVNSN 119
Query: 90 -------KPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTV 142
+ +NGFI FR+Y S++GYG+KQ +LS LL+ W + Q +W++F+ +Y+ V
Sbjct: 120 PNPVNSERVLNGFIAFRAYNSQFGYGLKQNILSSLLSTAWHENPNQQNVWNFFSQEYNFV 179
Query: 143 --GCEMGVWV 150
C W+
Sbjct: 180 KPKCGFVEWL 189
>TBLA0A07590 Chr1 complement(1881757..1882362) [606 bp, 201 aa] {ON}
Anc_1.1 YCL066W silenced copy of alpha1 gene at HML
locus
Length = 201
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 1 MSSTIYCNQNKPLFKVNIP--RRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPP 58
MS+ + K LFKVN+ + +R + + + ++ K +I L NI IP PP
Sbjct: 1 MSNKTMNHTKKALFKVNLKLNKNIRMKTNSKSMRNK-FNETRGISILLYKNHNIKIPFPP 59
Query: 59 NWVLQELETIRIIYPSKQKPKPRKQVTSNPS----------------------------- 89
+L +E + S Q + ++ +
Sbjct: 60 TTLLYNIEVEKQKIISTQHMLNEYTMDNDDNYLSDLFYEDEYNDNNSLFDNGFPNNVNSN 119
Query: 90 -------KPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTV 142
+ +NGFI FR+Y S++GYG+KQ +LS LL+ W + Q +W++F+ +Y+ V
Sbjct: 120 PNPVNSERVLNGFIAFRAYNSQFGYGLKQNILSSLLSTAWHENPNQQNVWNFFSQEYNFV 179
Query: 143 --GCEMGVWV 150
C W+
Sbjct: 180 KPKCGFVEWL 189
>Kpol_2002.2 s2002 complement(3611..4240) [630 bp, 209 aa] {ON}
complement(3611..4240) [630 nt, 210 aa]
Length = 209
Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 78 PKPRKQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFAL 137
P +V ++ K +NGF+ FR+Y S++GYG+KQ +LS LL++ W S Q W +
Sbjct: 123 PNSVIEVDTSSKKSLNGFMAFRAYNSQFGYGLKQEILSSLLSEAWHSDPEQQKKWTVLSQ 182
Query: 138 QYSTV--GCEMGVWV 150
Q++ V C WV
Sbjct: 183 QFNFVKPKCGFVEWV 197
>KLTH0F00374g Chr6 complement(30927..31676) [750 bp, 249 aa] {ON}
weakly similar to uniprot|P01365 Saccharomyces
cerevisiae YCR040W MATALPHA1 Transcriptional
co-activator involved in regulation of
mating-type-specific gene expression targets the
transcription factor Mcm1p to the promoters of
alpha-specific genes one of two genes encoded by the
alpha mating type cassette
Length = 249
Score = 55.8 bits (133), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 8 NQNKPLFKVNIPRRVRNRNSKQPLKPKPVTY-DTCFNIFLKDPKNITIPQPPNWVLQELE 66
N KP FKV I ++ + N + LK +Y + N+++ K IP+PPN ++ +
Sbjct: 2 NSTKPSFKVLIKKKGKTLNRR--LKNSSKSYRENGANLYMSYSKPQAIPKPPNTLINLVR 59
Query: 67 T----------IRIIYPSKQKPKPRKQVTSNPS---KPINGFILFRSYYSRWGYG-IKQT 112
+ ++ Y K+ + + SN + K IN FI FRSYY+++ G ++Q
Sbjct: 60 SKKTSQSSRKCLKNDYILKELDVKKLSIYSNNTVLKKKINPFIGFRSYYAKFAKGRVRQQ 119
Query: 113 MLSQLLAKFWKSSDTDQALWDYFALQYS 140
LS++L+++W + ++W++F Y+
Sbjct: 120 ELSKILSEYWTKNSKIHSVWEFFTQHYN 147
>Kwal_33.matalpha1 s33 complement(283160..283894) [735 bp, 244 aa]
{OFF} (matalpha1) - mating type alpha1 protein [contig
MAT] FULL
Length = 244
Score = 52.8 bits (125), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 11 KPLFKVNIPRR----VRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELE 66
KP FKV++ +R ++ + SK+ LK V+ N+++ K IP+PP V++ L
Sbjct: 5 KPSFKVSVNKRHGAKLKPKISKKSLKRNYVS--EGVNLYMSYSKQELIPKPPKAVMKILG 62
Query: 67 T----------IRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYG-IKQTMLS 115
+ + I+ ++ K IN FI FRSYY+R G I+Q LS
Sbjct: 63 SDHGKGLSKGLSKGIHKDQKSQTFLGSGKCTSKKKINPFIGFRSYYARIVKGRIRQQELS 122
Query: 116 QLLAKFWKSSDTDQALWDYFALQY---STVGC 144
+L+++W S W++F Y +TV C
Sbjct: 123 TILSQYWLSHHQVHKTWEFFTEHYNRDNTVMC 154
>Kwal_33.12992 s33 complement(31018..31752) [735 bp, 244 aa] {OFF}
YCR040W (MATALPHA1) - transcription factor involved in
the regulation of alpha-specific genes [contig 123] FULL
Length = 244
Score = 52.8 bits (125), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 11 KPLFKVNIPRR----VRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELE 66
KP FKV++ +R ++ + SK+ LK V+ N+++ K IP+PP V++ L
Sbjct: 5 KPSFKVSVNKRHGAKLKPKISKKSLKRNYVS--EGVNLYMSYSKQELIPKPPKAVMKILG 62
Query: 67 T----------IRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYG-IKQTMLS 115
+ + I+ ++ K IN FI FRSYY+R G I+Q LS
Sbjct: 63 SDHGKGLSKGLSKGIHKDQKSQTFLGSGKCTSKKKINPFIGFRSYYARIVKGRIRQQELS 122
Query: 116 QLLAKFWKSSDTDQALWDYFALQY---STVGC 144
+L+++W S W++F Y +TV C
Sbjct: 123 TILSQYWLSHHQVHKTWEFFTEHYNRDNTVMC 154
>Kwal_YGOB_matalpha1 s33 complement(283160..283894) [735 bp, 244 aa]
{ON} (matalpha1) - mating type alpha1 protein [contig
MAT] FULL
Length = 244
Score = 52.8 bits (125), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 11 KPLFKVNIPRR----VRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELE 66
KP FKV++ +R ++ + SK+ LK V+ N+++ K IP+PP V++ L
Sbjct: 5 KPSFKVSVNKRHGAKLKPKISKKSLKRNYVS--EGVNLYMSYSKQELIPKPPKAVMKILG 62
Query: 67 T----------IRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYG-IKQTMLS 115
+ + I+ ++ K IN FI FRSYY+R G I+Q LS
Sbjct: 63 SDHGKGLSKGLSKGIHKDQKSQTFLGSGKCTSKKKINPFIGFRSYYARIVKGRIRQQELS 122
Query: 116 QLLAKFWKSSDTDQALWDYFALQY---STVGC 144
+L+++W S W++F Y +TV C
Sbjct: 123 TILSQYWLSHHQVHKTWEFFTEHYNRDNTVMC 154
>Kwal_YGOB_HMalpha1 s33 complement(31018..31752) [735 bp, 244 aa]
{ON} ANNOTATED BY YGOB - This is Kwal_33.12992
Length = 244
Score = 52.8 bits (125), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 11 KPLFKVNIPRR----VRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELE 66
KP FKV++ +R ++ + SK+ LK V+ N+++ K IP+PP V++ L
Sbjct: 5 KPSFKVSVNKRHGAKLKPKISKKSLKRNYVS--EGVNLYMSYSKQELIPKPPKAVMKILG 62
Query: 67 T----------IRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYG-IKQTMLS 115
+ + I+ ++ K IN FI FRSYY+R G I+Q LS
Sbjct: 63 SDHGKGLSKGLSKGIHKDQKSQTFLGSGKCTSKKKINPFIGFRSYYARIVKGRIRQQELS 122
Query: 116 QLLAKFWKSSDTDQALWDYFALQY---STVGC 144
+L+++W S W++F Y +TV C
Sbjct: 123 TILSQYWLSHHQVHKTWEFFTEHYNRDNTVMC 154
>KLLA0C00352g Chr3 complement(24124..24909) [786 bp, 261 aa] {ON}
uniprot|Q08398 Kluyveromyces lactis HMLAPLHA1 Mating-
type protein ALPHA1
Length = 261
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 10 NKPLFKVNIPRR-----------VRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPP 58
N P FKV + +R +R+ ++P N+++ +IP PP
Sbjct: 4 NAPTFKVAVSKRSCSSVRKTSKKIRSGMIRKPSVSSRYRKHEGVNLYMSKVTPTSIPAPP 63
Query: 59 NWVLQEL-ETIRIIYPSK--------QKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGI 109
++ + E ++ + S+ + R T K IN FI FRSYYSR GI
Sbjct: 64 QVLVAYIKEKVKTLNKSEVLMSLGNSNQLSSRDVKTKTKKKQINDFIAFRSYYSRLLNGI 123
Query: 110 -KQTMLSQLLAKFWKSSDTDQALWDYFALQYS 140
QT LS +++K W + W+ A +Y+
Sbjct: 124 LTQTELSTIISKHWTVDKQTRKNWELIAQEYN 155
>KAFR0D00710 Chr4 complement(127819..128337) [519 bp, 172 aa] {ON}
mating type gene MATalpha1
Length = 172
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 89 SKPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALW 132
++ +N F+ FRSYYS++ G+KQ LS++LAK W S +Q W
Sbjct: 118 NRNLNPFMAFRSYYSQYAQGLKQIELSEVLAKAWHSDTKEQNYW 161
>Ecym_1003 Chr1 (6314..7105) [792 bp, 263 aa] {ON} similar to
Saccharomyces cerevisiae YCL066W HMLALPHA1
Length = 263
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 90 KPINGFILFRSYYSRWGYGIK-QTMLSQLLAKFWKSSDTDQALWDYFALQYS 140
K IN F+ FRSYYSR+ GI Q LS++LA+ W + W+ FA Y+
Sbjct: 111 KKINEFMAFRSYYSRFFRGIVPQLELSRILAQLWHEKPKMKRTWEMFAEHYN 162
>Ecym_1114 Chr1 complement(236238..237029) [792 bp, 263 aa] {ON}
similar to YCL066W HMLALPHA1
Length = 263
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 90 KPINGFILFRSYYSRWGYGIK-QTMLSQLLAKFWKSSDTDQALWDYFALQYS 140
K IN F+ FRSYYSR+ GI Q LS++LA+ W + W+ FA Y+
Sbjct: 111 KKINEFMAFRSYYSRFFRGIVPQLELSRILAQLWHEKPKMKRTWEMFAEHYN 162
>TPHA0E03620 Chr5 (766068..766655) [588 bp, 195 aa] {ON} Anc_1.121
YCR040W MATalpha1 gene at MAT locus
Length = 195
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90 KPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTV--GCEMG 147
K +N FI FR+Y +++G G+ Q +LS LL+ W S+ +WD FA Q++ V C
Sbjct: 122 KSLNSFIAFRAYNAQFGNGLNQHLLSHLLSLAWHSAPEQHHVWDVFAQQFNFVKPKCGFV 181
Query: 148 VWV 150
WV
Sbjct: 182 EWV 184
>TPHA0E04080 Chr5 (850045..850632) [588 bp, 195 aa] {ON} silenced
copy of alpha1 at HMLalpha locus
Length = 195
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90 KPINGFILFRSYYSRWGYGIKQTMLSQLLAKFWKSSDTDQALWDYFALQYSTV--GCEMG 147
K +N FI FR+Y +++G G+ Q +LS LL+ W S+ +WD FA Q++ V C
Sbjct: 122 KSLNSFIAFRAYNAQFGNGLNQHLLSHLLSLAWHSAPEQHHVWDVFAQQFNFVKPKCGFV 181
Query: 148 VWV 150
WV
Sbjct: 182 EWV 184
>KNAG0H00720 Chr8 (114623..116173) [1551 bp, 516 aa] {ON} Anc_3.354
YPR065W
Length = 516
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 90 KPINGFILFRSYYSR-----WG-YGI---KQTMLSQLLAKFWKS-SDTDQALWDYFALQ 138
+P N FILFR +Y R W +G+ T +S++L WK ++ WD A Q
Sbjct: 57 RPRNAFILFRQHYHRILIDDWTKHGVDIPHNTQISKILGTKWKELGPEEKHQWDELARQ 115
>SAKL0D10450g Chr4 (875475..877151) [1677 bp, 558 aa] {ON} highly
similar to gnl|GLV|KLLA0A11110g Kluyveromyces lactis
KLLA0A11110g
Length = 558
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 53 TIPQPPNWVLQELETIRIIYPSKQKPKPRKQVTSNPSKPINGFILFRSYYSRWGYGI 109
++PQP + + +TIRI P ++KP R + S+ ++ S+ WG GI
Sbjct: 367 SVPQPNGF--EGDDTIRIRIPEEEKPAARAVIASS-------YLFVCSFAPTWGIGI 414
>Skud_16.350 Chr16 (644526..645644) [1119 bp, 372 aa] {ON} YPR065W
(REAL)
Length = 372
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 90 KPINGFILFRSYYSR-----W-GYGIK---QTMLSQLLAKFWKS-SDTDQALWDYFA 136
+P N FILFR +Y R W G++ + +S+++ WK D+A W+ A
Sbjct: 12 RPKNAFILFRQHYHRILIDEWTAQGVEIPHNSNISKIIGTKWKGLQPEDKAHWENLA 68
>YPR065W Chr16 (679693..680799) [1107 bp, 368 aa] {ON}
ROX1Heme-dependent repressor of hypoxic genes; contains
an HMG domain that is responsible for DNA bending
activity
Length = 368
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 90 KPINGFILFRSYYSR-----W-GYGIK---QTMLSQLLAKFWKS-SDTDQALWDYFA 136
+P N FILFR +Y R W G++ + +S+++ WK D+A W+ A
Sbjct: 12 RPKNAFILFRQHYHRILIDEWTAQGVEIPHNSNISKIIGTKWKGLQPEDKAHWENLA 68
>TPHA0E03640 Chr5 complement(769962..773375) [3414 bp, 1137 aa] {ON}
Anc_1.52 YDR507C
Length = 1137
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 17 NIPRRVRNRNSKQPL---KPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELETIRIIYP 73
N+PRR +NRNS + KPV+Y+ + I++P N + I +
Sbjct: 411 NVPRRRKNRNSMISVTSSHKKPVSYNKIAMVGGSSKDVISLPSSSNTTPASSKRISLSLS 470
Query: 74 SKQKPKPRKQVTSNPSKP 91
S K R SN S P
Sbjct: 471 SSNKRNSRLYTQSNSSSP 488
>Skud_6.105 Chr6 (190549..192051) [1503 bp, 500 aa] {ON} YFR021W
(REAL)
Length = 500
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 19 PRRVRNRNSKQPLKPKPVTYDTCFNIFLKDPKNITIPQPPNWVLQELETIRIIYPSKQKP 78
PRR+R N+K+ VT+ T + + + + ++ T+R+++ + P
Sbjct: 72 PRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNP 131
Query: 79 KPRKQVTSNPSKPINGFILFRS 100
PR + ++PS N ++++ S
Sbjct: 132 NPRGLMATSPSVA-NSYLVYPS 152
>NCAS0A01050 Chr1 complement(207858..209774) [1917 bp, 638 aa] {ON}
Anc_6.224 YPL210C
Length = 638
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 82 KQVTSNPSKPINGFILFRSYYSRWGYGIKQTMLSQLLAKF--WKSSDTDQALWDYFALQY 139
K +S+ S I +ILF Y + K+ +L + L W S + D W + A Q
Sbjct: 409 KDKSSSKSNHIVKYILFELYKVTGRHNSKRMLLFRTLTTLDNWDSIEQDLPFWKHVAFQN 468
Query: 140 STVG 143
T+G
Sbjct: 469 LTIG 472
Database: Seq/AA.fsa
Posted date: Aug 24, 2012 3:22 PM
Number of letters in database: 53,481,399
Number of sequences in database: 114,666
Lambda K H
0.320 0.136 0.438
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 114666 Number of Hits to DB: 17,655,592 Number of extensions: 760476 Number of successful extensions: 2050 Number of sequences better than 10.0: 45 Number of HSP's gapped: 2027 Number of HSP's successfully gapped: 48 Length of query: 150 Length of database: 53,481,399 Length adjustment: 100 Effective length of query: 50 Effective length of database: 42,014,799 Effective search space: 2100739950 Effective search space used: 2100739950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)